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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        Tool Citations

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        About MultiQC

        This report was generated using MultiQC, version 1.13

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2022-12-12, 15:46 +07 based on data in: /home/blacksheeperoot/Work/Dev/nadiatools_tutorial/results/STARsolo

        General Statistics

        Showing 1/1 rows and 8/8 columns.
        Sample Name% AlignedM AlignedNumber of ReadsEstimated Number of CellsUnique Reads in Cells Mapped to GeneMean Reads per CellMean UMI per CellMean Gene per Cell
        HEK_3T3
        67.0%
        103.2
        154038732.0
        2501.0
        13779225.0
        5509.0
        2241.0
        1323.0

        STAR

        STAR is an ultrafast universal RNA-seq aligner.DOI: 10.1093/bioinformatics/bts635.

        Alignment Scores

        loading..

        STARsolo

        STARsolo STARsolo: accurate, fast and versatile mapping/quantification of single-cell and single-nucleus RNA-seq data.DOI: 10.1101/2021.05.05.442755.

        Sequencing Metrics

        Sequencing metrics

        Showing 1/1 rows and 5/5 columns.
        Sample NameNumber of ReadsReads With Valid BarcodesSequencing SaturationQ30 Bases in CB+UMIQ30 Bases in RNA read
        HEK_3T3
        154038732.0
        1.0
        0.5
        0.0
        0.9

        Mapping Metrics

        Mapping metrics

        Showing 1/1 rows and 4/4 columns.
        Sample NameReads Mapped to Genome: Unique+MultipleReads Mapped to Genome: UniqueReads Mapped to Gene: Unique+Multiple GeneReads Mapped to Gene: Unique Gene
        HEK_3T3
        0.8
        0.7
        0.2
        0.2

        Cell Metrics

        Cell metrics

        Showing 1/1 rows and 11/11 columns.
        Sample NameEstimated Number of CellsUnique Reads in Cells Mapped to GeneFraction of Unique Reads in CellsMean Reads per CellMedian Reads per CellUMIs in CellsMean UMI per CellMedian UMI per CellMean Gene per CellMedian Gene per CellTotal Gene Detected
        HEK_3T3
        2501.0
        13779225.0
        0.4
        5509.0
        3396.0
        5605231.0
        2241.0
        1595.0
        1323.0
        1101.0
        30843.0

        Nadiatools

        Nadiatools #.DOI: #.

        Knee plot

        Violin plot

        Highest Expressed Genes

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

        MultiQC v1.13 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.